PRISM
An independent data platform for cancer drug sensitivity research, used as a reference dataset for cross-platform validation of pharmacogenomics methodologies.
Timeline (last 90 days)
PRISM is a native Postgres index access method that requires no additional deployment of a separate service; it clusters vectors by k-means, stores them using RaBitQ encoding, and during queries first walks the centroid tree to find the nearest cluster, scans the posting list, filters using error bounds, and then reranks with full-precision vectors.
At a scale of 1 million vectors, PRISM achieves 99% recall and 15 milliseconds median latency on a 2GB c8g.medium; HNSW on a 4GB c8g.large is 392 milliseconds, with building taking about 21.7 hours and exhibiting memory thrashing.
Official benchmarks show that at a scale of 100 million vectors, PRISM's median latency is 6 milliseconds, while pgvector's HNSW failed to complete building on the same machine.
Tiger Data (the company behind TimescaleDB) has released an open-source Postgres extension named pg_vectorsearch, using a new index, PRISM.
In ablation experiments, replacing numerical EHR encoding with text serialization resulted in a 3.66 percentage point drop in AUROC, the largest impact among all interventions tested.
On the MDS-ED benchmark comprising 1,443 tasks, PRISM achieved a diagnostic AUROC of 86.2%, deterioration prediction of 93.1%, ICU admission prediction of 91.8%, and mortality prediction of 92.8%.
PRISM's high scores utilized a 96-hour pre-arrival time window, a condition not available to the comparison baseline models.
In a fair comparison using only the baseline window input, PRISM's AUROC was 0.8895, broadly on par with UniPACT's 0.8937 and MDS-ED's 0.8889.
Ablation experiments showed that removing pre-arrival medical history caused AUROC to drop by 1.97 points, and zeroing out retrieval caused AUROC to drop by 0.99 points.
True retrieval outperformed random neighbor retrieval by 0.97 points on the macro-average, but a paired task-level sign test did not establish a consistent advantage (p=0.067).
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All Facts (19)
PRISM is a native Postgres index access method that requires no additional deployment of a separate service; it clusters vectors by k-means, stores them using RaBitQ encoding, and during queries first walks the centroid tree to find the nearest cluster, scans the posting list, filters using error bounds, and then reranks with full-precision vectors.
50%UnverifiedIn a fair comparison using only the baseline window input, PRISM's AUROC was 0.8895, broadly on par with UniPACT's 0.8937 and MDS-ED's 0.8889.
50%UnverifiedOn the external MC-MED cohort, the directly transferred source-only PRISM achieved only 0.7841 AUROC, falling below the locally trained gradient boosting model's 0.8227.
50%UnverifiedAfter supervised fine-tuning, PRISM improved to 0.8611 AUROC on the external MC-MED cohort, surpassing the locally trained traditional model.
50%UnverifiedStructure-aware multimodal integration outperforms the approach of serializing everything into text.
50%UnverifiedCross-institutional deployment of medical models requires supervised external adaptation and cannot rely on zero-shot direct transfer.
50%UnverifiedPRISM (Population-Retrieved Inference for Structured Multimodal Prognosis) is a retrieval-augmented multimodal language model used to integrate heterogeneous clinical evidence for clinical prognostic prediction.
50%UnverifiedPRISM performs structured processing at three key stages: applying independent numerical tokenization to each numerical feature, using recency-weighted aggregation for longitudinal ECGs, and constructing a bimodal population memory bank.
50%UnverifiedPRISM's retrieval operates in representation space, where the model receives mean-pooled embeddings from visit records of similar training cohorts rather than individual traceable patient records.
50%UnverifiedIn ablation experiments, replacing numerical EHR encoding with text serialization resulted in a 3.66 percentage point drop in AUROC, the largest impact among all interventions tested.
50%UnverifiedOn the MDS-ED benchmark comprising 1,443 tasks, PRISM achieved a diagnostic AUROC of 86.2%, deterioration prediction of 93.1%, ICU admission prediction of 91.8%, and mortality prediction of 92.8%.
50%UnverifiedPRISM's high scores utilized a 96-hour pre-arrival time window, a condition not available to the comparison baseline models.
50%UnverifiedA compact fusion model using the same five evidence streams and frozen encoders achieved only 0.7652 AUROC under matched inputs, while PRISM reached 0.9092 under the same settings.
50%UnverifiedAblation experiments showed that removing pre-arrival medical history caused AUROC to drop by 1.97 points, and zeroing out retrieval caused AUROC to drop by 0.99 points.
50%UnverifiedTrue retrieval outperformed random neighbor retrieval by 0.97 points on the macro-average, but a paired task-level sign test did not establish a consistent advantage (p=0.067).
50%UnverifiedPRISM is a high-throughput drug screening platform developed by the Broad Institute that barcodes cell lines and uses mixed-culture co-culture to simultaneously measure the response of multiple cell lines to the same drug.
50%UnverifiedThe authors performed cross-platform replication using the independent data platform PRISM, achieving 82% directional consistency, but with weak rank correlation (rho=0.25).
50%UnverifiedThe U.S. National Security Agency (NSA) collected user data directly from the servers of tech giants such as Google, Microsoft, and Apple through programs including PRISM.
50%UnverifiedTiger Data (the company behind TimescaleDB) has released an open-source Postgres extension named pg_vectorsearch, using a new index, PRISM.
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